miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|39621331|gb|CK215227.1|CK215227 CCGAGAGCGGCCGCCCTTTTTTTCCTTTTTTTTTTTTTTTTTTTAATCCCCTGAAAATAGTTAAGTCTTTTGCCTTGTTG
AAAAAAAAAAAAAGCAAACCCTCTGATAAGCGTTCTCGAGATATTCATCCAACAAAAAAAAAATCCATACAACATTATTT
TCTTTTACTCTGCCTCTGTACCAGCAATGCTCTTCTTCAAGGACTCCACGTCGTCGGCCAGCTCTTCCCTGCGTTCCTTG
AAGAGGAGGTAGCGGTACACGAACCATCCGCTGTAGCCGAGCCCAACAGGCTCCATGATCTTGGGAAGCAGAGGCAGGGA
GTTGATGGCGCCGACGATGACGGAGGAGAACCATACGGCGACGATGGCGCCGCCGGCGTACGTCAGCACGGTGGACTTGT
TCTCGACGGCGTCCCACTTGGCTTTCAGGTCGTCGACGAGCTCGTCGCCGCTCGCGGCAGAGGTGTCATCGGAGGAGGCC
TTCGCCCGGAGCAGAGAGAGCCGCGGTGTATCTTGGAGGCCAAGAGGGGAGAAGTTACGCCGTGGGAGGAGAACGGACCG
CGGCGCGGCGGCGGCGCGGACGGGGAGGCGCGCTCCTGCTCCACCCAGAAGCGCCGTAGAGCACGCCGTTGTGGCCATGT
TCTCACCTGCAAGCTCTTTCTACTCCTTCAGTCCATGTCAGTGTCCTCGTGCTCCAGTCGCGGACGCGTGGGTCGACGAT
ATCCCGGGAA




Most similar to sp|O04616|Y4115_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150,
           chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1
           SV=1
          Length = 164

 Score =  149 bits (375), Expect = 2e-35
 Identities = 69/90 (76%), Positives = 80/90 (88%)
 Frame = -3

Query: 443 ELVDDLKAKWDAVENKSTVLTYAGGAIVAVWFSSVIVGAINSLPLLPKIMEPVGLGYSGW 264
           EL+ DLK KWD +ENKSTVL Y GGAIVAVW SS++VGAINS+PLLPK+ME VGLGY+GW
Sbjct: 75  ELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGW 134

Query: 263 FVYRYLLFKERREELADDVESLKKSIAGTE 174
           FVYRYLLFK  R+ELA+D+ESLKK IAG+E
Sbjct: 135 FVYRYLLFKSSRKELAEDIESLKKKIAGSE 164